countSequencesPerCell - countSequencesPerCell

Description¶

countSequencesPerCell counts the number of sequences of each isotype in each sample’s cell

Usage¶

countSequencesPerCell(
db,
sample_id = "sample_id",
cell_id = "cell_id",
locus = "locus",
c_call = "c_call"
)

Arguments¶

db

data.frame with AIRR-format style columns.

sample_id

column in db containing sample identifiers

cell_id

column in db containing cell identifiers

locus

column in db containing locus assignments

c_call

column in db containing constant region assignments

Value¶

A data.frame with cell counts

Examples¶

db <- Example10x

Error in eval(expr, envir, enclos): object ‘Example10x’ not found

db[['sample_id']] <- 'example_sample'

Error in db[[“sample_id”]] <- “example_sample”: object ‘db’ not found

countSequencesPerCell(db[1:10,])

Error in group_by(., sample_id, cell_id, locus): object ‘db’ not found

See also¶

See also plotSequencesPerCell.