removeSingleCellDuplicates - removeSingleCellDuplicates

Description¶

removeSingleCellDuplicates removes cells sharing the same identifier and sequence between groups.

Usage¶

removeSingleCellDuplicates(
db,
fields,
cell_id = "cell_id",
seq = "sequence_alignment",
sequence_id = "sequence_id",
mode = c("sequences", "cells")
)

Arguments¶

db

data.frame with AIRR-format style columns.

fields

Columns in db, in addition to sample_id, that should be used to group sequences to be analyzed independently.

cell_id

column in db containing cell identifiers

seq

column in db containing sequences to be compared

sequence_id

column in db containing sequence identifiers

mode

Use sequences to remove duplicated sequences and cells to remove cells with duplicated sequences.

Value¶

A data.frame: a modified db without the duplicated sequences or cells.