enchantR is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). Immcantation provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.
- Provides additional quality control and reporting functions for other R packages in the Immcantation framework.
- Provides parametrized
.Rmdreports for standard analysis.
- Is part of the magic behind nf-co.re/airrflow, a start-to-finish Nextflow pipeline to analyze AIRR-seq data.
For help and questions, please contact the Immcantation Group or use the issue tracker.
Imports: airr, alakazam, bookdown, ComplexHeatmap, data.table, doParallel, dowser, dplyr, DT, ggraph, ggplot2, gridExtra, igraph, knitr, optparse, plotly, RColorBrewer, reshape2, rmarkdown, scales, scoper, shazam, stringi, stringr, tidyr
Susanna Marquez (aut, cre)
Steven Kleinstein (aut, cph)