enchantR reports¶

The ‘enchantr’ package provides template parametrized reports to analize AIRR-seq data with the Immcantation framework. The different reports can be used from the command line, to be incorporated into complex workflows, or can be used from RStudio to create project templates.

Quick start¶

Command line¶

Rscript -e "enchantr:::enchantr_report('report_name', \
  report_params=list('input'='report_input', 'outdir'=getwd()))"

RStudio¶

Go to File > New Project... > New Directory... and select an Immcantation project.