enchantR reports

The ‘enchantr’ package provides template parametrized reports to analyze AIRR-seq data with the Immcantation framework. The different reports can be used from the command line, from RStudio to create project templates or incorporated into complex workflows.

Quick start

Command line

Rscript -e "enchantr:::enchantr_report('report_name', \
  report_params=list('input'='report_input', 'outdir'=getwd()))"


Go to File > New Project... > New Directory... and select an Immcantation project.